PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09645.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 186aa    MW: 21098.9 Da    PI: 6.6823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09645.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18655255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             +++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a++ ++g
  Rsa1.0_09645.1_g00001.1  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAALLMNG 55
                             89****999.**********8.....334**********************98877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-32564IPR001471AP2/ERF domain
CDDcd000188.88E-23665No hitNo description
SMARTSM003805.2E-39669IPR001471AP2/ERF domain
PfamPF008471.2E-11655IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-20664IPR016177DNA-binding domain
PROSITE profilePS5103222.221663IPR001471AP2/ERF domain
PRINTSPR003672.8E-10718IPR001471AP2/ERF domain
PRINTSPR003672.8E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA LLMNGQNAKT  60
NFPVVKSEQQ GSDDHDGNSP LMSPKSLSEL LNAKLRKSCK DLTPSLTCLR LDTDSSHIGV  120
WQKRAGSKTS PNWVMRLELG NVVVNENAHG LVMKKQDVEK EDVEEEANVD EDQLAMEMIE  180
ELLNWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16464364ATERF1
3gcc_A3e-16464364ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608651e-148AY560865.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g11190) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121987.11e-115PREDICTED: ethylene-responsive transcription factor SHINE 2
RefseqXP_013666110.11e-115PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ9LFN71e-100SHN2_ARATH; Ethylene-responsive transcription factor SHINE 2
TrEMBLA0A078C0U61e-115A0A078C0U6_BRANA; BnaA10g21280D protein
TrEMBLM4CXN81e-115M4CXN8_BRARP; Uncharacterized protein
STRINGBra008985.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.15e-91ERF family protein